Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MAQSLNKTVEFQTTGVSYLGMGNKVGKFLVGDQALEFYNDKNVNDYI-QIPWTSINQIGA-----NVSRKKISRHFEVFTDQGKFLFASKDSGTI--LKHARRHIGDDKVVKLPTLIQTILKIFKFKK
2D9Z Chain:A ((1-129))
GSSGSSGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
2D9Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39956 for 767 contacts (-52.1/contact) +
2D Compatibility (PS) -12551 + (NN) 893 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -53814.0 ( -70.16 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_2D9Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D9Z-query.scw
PDB file :
Tito_Scwrl_2D9Z.pdb
: