Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MKQAETLTSL------EQVLKQIKYSLDSYYSFCVKKGFVLKVIPVRENIEEVSYLLNMIESQKDTEIST-----YYVDK---LSKQLKEFVKKLNSWEVKPLFTSE--QLSKLTTYSTFLENKE-
3HF7 Chain:A ((1-127))
KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHS--PHGRIVLYRDSLDDAISMLR-VREAYRLMTEKKEFTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKK---VGLVVDEYGDIQGLVTVEDILEEIVG
General information:
TITO was launched using:
RESULT:
Template:
3HF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23009 for 636 contacts (-36.2/contact) +
2D Compatibility (PS) -10742 + (NN) -1757 + (LL) 472
1D Compatibility (HY) -6800 + (ID) 950
Total energy: -42786.0 ( -67.27 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_3HF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HF7-query.scw
PDB file :
Tito_Scwrl_3HF7.pdb
: