Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKIISLGEVLLRLSPPQYHTLMQANHLKCQFGGSELNVLASLAQLGHHVGLVSALPDNDLGKMARQFILSQQISPAAIIK-KEGRLGIYYYEQGFS--VRTNKVIYDRNYSSFWESTLSDYDFTSIFKGVDWFHVSGITPALTKDLYEVTRFLMTKAKEGGVKVSIDLNFRESLWSSFQEAREQLSPLLGLLD--VCFGLEPIYLAGESEDLKDELGLSRPYLDIELLEKITQKIVQEYGLDYIAFTQREMEYTNQYMLKSYLYHNNMLYQTDKTGVEVLDRVGTGDAFAAGLIHALLEKETPQRALEIAMATFKYKHTIQGDINIMTR-DDIAYLIEKETNDIKR |
| 2V78 Chain:A ((2-311)) | -VDVIALGEPLIQFNSFNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPM-KSELVYYRKGSAGSRLSPEDINEN-YVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPD--------DTKILLDVTD-------PDEAYRKYKE-LGVK-----VLLYKLGSKG---AIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEFK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V78.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131253 for 2815 contacts (-46.6/contact) +
2D Compatibility (PS) -32448 + (NN) -8522 + (LL) 3056
1D Compatibility (HY) -13200 + (ID) 3550
Total energy: -185917.0 ( -66.05 by residue)
QMean score : 0.424
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