Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------MRRRIKPIVVAVF--FSLFGLLLIIGHLHSTNTLKKELVEAK-KTIPSVKASKVPQKSTSSKDKEFVLKPIIDV----------SGWQLPKEIDYDTLSKNIS-----CVVIRVFGGSKISKTNNAAYTTGIDKSFKTHIKEFQKRNIPVAVYSYALGSSVKEMKEEAQIFYKNAAPYKPTFYWIDVEEETMSNMNKGVQAF------------RKELKRLGAKNVGIYI--------------GTYFMTEQGISVK-GFDAVWIPTYGSDSGYYEAAPQTELKYDLHQYTSQGYLPGFN---------------------QPLDLNQIAVNKDKKKTYEKLF--GKVKE |
| 2GOK Chain:A ((17-420)) | ATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAHAEGLADAVDGFCEGIAFS--VKEIDRVFAAAQQRGLPV-KLHAEQLSNLGGAELAASYNALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKGQKVS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GOK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1030 for 2194 contacts (-0.5/contact) +
2D Compatibility (PS) -29061 + (NN) 3081 + (LL) 404
1D Compatibility (HY) -800 + (ID) 1300
Total energy: -28706.0 ( -13.08 by residue)
QMean score : 0.275
|
|
|