Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIWTNLGRFAFIETEHVNLRPVAYTDREAFWRIASKRT-NLQFIFPVQTSKKESDFLLVHSFM---KEPLGVWAIEDKVSHKMFGVIRFENIDLSKKTAEIGYFLKESSWGQGIMTECLKTLSFFAFQEFGMDKLIIVTHKENIASQKVALKAHFKQSRSFKGSDRYTRRIRDYIEFQLTRGDYRYE
2FCK Chain:A ((4-181))
------MTPDFQIVTQRLQLRLITADEAEELVQCIRQSQTLHQWVDW--FSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSLIP------
General information:
TITO was launched using:
RESULT:
Template:
2FCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71326 for 1257 contacts (-56.7/contact) +
2D Compatibility (PS) -18214 + (NN) -4795 + (LL) 916
1D Compatibility (HY) -9200 + (ID) 1650
Total energy: -104269.0 ( -82.95 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_2FCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FCK-query.scw
PDB file :
Tito_Scwrl_2FCK.pdb
: