Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------MQGRIVKSLAGFYYVESDGVVYQTRARGNFRKKGQIPYVGD-WVEFSSQDQSEGYILSIEERKNSLVRPPIVNIDQAVVIMSAKEPDFNANLLDRFLVLLEYKMIQPIIYISKLDLLDDLVVIDDIREHY---QNIGYVFCYSQEELLPLLADKVTVFMG-QTGVGKSTLLNKIAPELKLETGEISDSLGRGRHTTRAVSFYNVHKGKIADTPGFSSLDYEVDNAEDLNESFPELRRLSHFCKFRSCTHTHEPKCAVKEALTQGQLWQVR---------YDNYLQFLSEIENRRETYKKVIKRK- |
| 2YN5 Chain:A ((1-283)) | TPPNAPVVTYSDIVNDLIIMQGT-AEAKSQLIITDSEGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIGNR--SDDVPLDIMKEVPVISLS----------PDSDSGTVGDNITRDK----QPTFIIGNLESDVVVVQVDINGTVYNAEKNADGVWFFTPGTPLADGSYTISVIASDAAGNQKNSLPITVTIDSTLTVPEIALAAGEDNGASDS------------------------DNVTNHTQPKFTLQHIDADVTGVTVNVTHNGVTDIYQATQGADGWTFTPPAAWNDGNYTLSVTVVDRAGNSQQSASLAVTVDS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YN5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22227 for 1727 contacts (-12.9/contact) +
2D Compatibility (PS) -26080 + (NN) 6124 + (LL) 3572
1D Compatibility (HY) -1600 + (ID) 2150
Total energy: -42361.0 ( -24.53 by residue)
QMean score : 0.119
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