Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLRRPVLEDKEEILAMYKEFQKESSSVDGGFY--EPTMHFEDWLDHNLNMELGVGVPDNFVPYIQFVSFDNDNNAIGFLNLRLRLNDTLLEKGGHIGYSIRPRQRGKGYAKEQLKLGIEQAHLKNINEILVTCHVDNDASKSVILANGGVLEDCLHQTERYWIT
1YR0 Chain:A ((5-146))
VELRDATVDDLSGIMEIYNDAVVNT--TAIWNEVVVDLENRKDWFAARTS------------RGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGR
General information:
TITO was launched using:
RESULT:
Template:
1YR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19620 for 980 contacts (-20.0/contact) +
2D Compatibility (PS) -15308 + (NN) -8433 + (LL) 500
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -45011.0 ( -45.93 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1YR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YR0-query.scw
PDB file :
Tito_Scwrl_1YR0.pdb
: