Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGV-D-PLA-M---PVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
2OAF Chain:A ((10-149))
---------QPRPDSAFVHDVRVTWGDCDPAKIAYTGHLPRFALEAIDAWWSE-YHGPGGWYHLELDTNVGTPFVRLEMDFKSPVTPRHILKCHTWPTRLGTKSITFRVDGVQD----GVTCFVGAFTCVFTIADQFKSQPAPDHLRALIEPHI---
General information:
TITO was launched using:
RESULT:
Template:
2OAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109493 for 993 contacts (-110.3/contact) +
2D Compatibility (PS) -14455 + (NN) -5085 + (LL) 520
1D Compatibility (HY) -2400 + (ID) 1400
Total energy: -132313.0 ( -133.25 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2OAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OAF-query.scw
PDB file :
Tito_Scwrl_2OAF.pdb
: