Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPVNVISVAVVASDPLTRDGALARLSSHRELDVRAWQ--------A-GCETSVLLVLATTITAP-LLCQIEDVQKDGPSHAPKLVVVADEFSAEQVFRMIKLGLTGLLYRSQSTFDCIVETIRLSAEGRLRLPERVQRYLVGRIKSTPTAEPDTPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGLI
1YIO Chain:A ((3-200))
----AKPTVFVVDDDMSVREGLRNLLRSA-GFEVETFDCASTFLEHRRPEQHGCLVLDMR-MPGMSGIELQEQLTAIS--DGIPIVFITAHGDIPMTVRAMKAGAIEFLPK-PFEEQALLDAIEQGLQLNAERRQARET-----------QDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY---
General information:
TITO was launched using:
RESULT:
Template:
1YIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125534 for 1333 contacts (-94.2/contact) +
2D Compatibility (PS) -20085 + (NN) -4073 + (LL) 1160
1D Compatibility (HY) -4800 + (ID) 1800
Total energy: -155132.0 ( -116.38 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_1YIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIO-query.scw
PDB file :
Tito_Scwrl_1YIO.pdb
: