Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNDRFRDKVALVSGAAQGIGLGVARRLLEEGARVVAV----DR-SELVHEL--AGDACLCLTADLERYAECQRVLERTLERFGRLDILVNNVGGTLWAKPYQHYAEDEIEAELRRSLLPTLWCCRAALPAMLGQGSGAIVNVSSVA--TRGVNRVPYGAAKGGVNALTACLAFETADQGIRVNAVAPGGTDAPPRRIPRNAAAQSEEERRWYRQIVEQTLDSSLMKRYGSIDEQVAAILFLASDEASYITGVTLPVAGGDLG
4FN4 Chain:D ((5-250))----LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKT---NIGLGSSKPSELGMRTLTKLM------SLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGG---


General information:
TITO was launched using:
RESULT:

Template: 4FN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160473 for 2089 contacts (-76.8/contact) +
2D Compatibility (PS) -24988 + (NN) -5426 + (LL) 248
1D Compatibility (HY) -16800 + (ID) 4300
Total energy: -211739.0 ( -101.36 by residue)
QMean score : 0.544

(partial model without unconserved sides chains):
PDB file : Tito_4FN4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4FN4-query.scw
PDB file : Tito_Scwrl_4FN4.pdb: