Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1Y6O Chain:A ((1-125))
----------------------ALWQFRSLIKCAIPGSHPLLDFNNYGCYCGLGGSGTPVDELDRCCETHDCCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYCK-
General information:
TITO was launched using:
RESULT:
Template:
1Y6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65522 for 940 contacts (-69.7/contact) +
2D Compatibility (PS) -13101 + (NN) -6448 + (LL) 2188
1D Compatibility (HY) -17200 + (ID) 5000
Total energy: -105083.0 ( -111.79 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6O-query.scw
PDB file :
Tito_Scwrl_1Y6O.pdb
: