Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1NF3 Chain:B ((5-140))
IQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
1NF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65533 for 984 contacts (-66.6/contact) +
2D Compatibility (PS) -14766 + (NN) -7614 + (LL) 0
1D Compatibility (HY) -20800 + (ID) 6700
Total energy: -115413.0 ( -117.29 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1NF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NF3-query.scw
PDB file :
Tito_Scwrl_1NF3.pdb
: