Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
1KV5 Chain:A ((2-250))
--SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ
General information:
TITO was launched using:
RESULT:
Template:
1KV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193143 for 2172 contacts (-88.9/contact) +
2D Compatibility (PS) -27123 + (NN) -10987 + (LL) 352
1D Compatibility (HY) -29200 + (ID) 9150
Total energy: -269251.0 ( -123.96 by residue)
QMean score : 0.829
(partial model without unconserved sides chains):
PDB file :
Tito_1KV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KV5-query.scw
PDB file :
Tito_Scwrl_1KV5.pdb
: