Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3JYJ Chain:B ((11-123))
--------------------------------------------------EPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3JYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31188 for 858 contacts (-36.3/contact) +
2D Compatibility (PS) -12204 + (NN) -6918 + (LL) 1004
1D Compatibility (HY) -12000 + (ID) 5550
Total energy: -66856.0 ( -77.92 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3JYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JYJ-query.scw
PDB file :
Tito_Scwrl_3JYJ.pdb
: