Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVREPQ
3IPT Chain:A ((2-128))
-NLPTAQEVQGLMARSIELVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGL---KVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVR---
General information:
TITO was launched using:
RESULT:
Template:
3IPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74919 for 905 contacts (-82.8/contact) +
2D Compatibility (PS) -13698 + (NN) -4492 + (LL) -224
1D Compatibility (HY) -17600 + (ID) 6100
Total energy: -117033.0 ( -129.32 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3IPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IPT-query.scw
PDB file :
Tito_Scwrl_3IPT.pdb
: