Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGA---P--GMTP-----------YGICCNSLGVLNQLAASTADRVAACNCVKAAASGGFP---AVDF-----SRAAALPAACGLAINFAVTPNMDCNQVTDEP
1W2Q Chain:A ((23-114))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP----------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40596 for 405 contacts (-100.2/contact) +
2D Compatibility (PS) -6916 + (NN) -698 + (LL) 2020
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -48640.0 ( -120.10 by residue)
QMean score : 0.187
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: