Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSCGDAVSALAPCGPFLLGG----AA-----------RPGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF---GV--------LPDRARRLPALCKLGLAIPVGAATDCSKIS
1SM7 Chain:A ((14-101))
--------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41745 for 410 contacts (-101.8/contact) +
2D Compatibility (PS) -5639 + (NN) 5619 + (LL) 1304
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -45111.0 ( -110.03 by residue)
QMean score : 0.112
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: