Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVARAALSCSTVYNTLLPCLPYVQS---GG---A------------VPAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAAGG---PY-----ISRAAGLPGRCGVSVP--FKISPNVNCNAVN
1W2Q Chain:A ((22-121))
-------------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-----N-TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45698 for 426 contacts (-107.3/contact) +
2D Compatibility (PS) -7356 + (NN) -383 + (LL) 2520
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -53517.0 ( -125.63 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: