Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSCNTVIADLYPCLSYVTQ---GG---PV------------PTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTL--SPRT-----IQNALELPSKCGVDLP--YKFSPSTDCDSIQ
1W2Q Chain:A ((22-121))
-------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-----N-TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37066 for 422 contacts (-87.8/contact) +
2D Compatibility (PS) -7391 + (NN) -1672 + (LL) 1352
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -47877.0 ( -113.45 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: