Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GIVKVSWGEKKVACTVTELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYLQNP-QFSQY----------ITAAKQILAACKIPYPNC------------------------
1U78 Chain:A ((2-104))
--------PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18174 for 359 contacts (-50.6/contact) +
2D Compatibility (PS) -6950 + (NN) -3057 + (LL) 492
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -29789.0 ( -82.98 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: