Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC
M038 Chain:A ((1-107))
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC
General information:
TITO was launched using:
RESULT:
Template:
M038.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28237 for 521 contacts (-54.2/contact) +
2D Compatibility (PS) -8117 + (NN) -9514 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 3800
Total energy: -59268.0 ( -113.76 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_M038.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M038-query.scw
PDB file :
Tito_Scwrl_M038.pdb
: