Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVVGAVAPCLGYLRN---GGT----PPQPCCTGVRGLRNAARTTSDRKTICNCLKSASSSYR-------G----VSGNYAASLPGKCGVNLPYKISPSTDCNRIQ
1HSS Chain:A ((15-105))
-------PALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHIS--------EWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVV------------
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45182 for 404 contacts (-111.8/contact) +
2D Compatibility (PS) -6364 + (NN) 1240 + (LL) 1388
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -54918.0 ( -135.94 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: