Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGQVVASLSPCISYVRQ---GG---AI------------PAPCCSGIKSLNNQATSTPDRQTACNCIKSAAAAIN----GIN-----YSLAGSLPSKCGVNLP--YKISPSIDCSTVH
1W2Q Chain:A ((22-121))
-------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-----N-TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39330 for 414 contacts (-95.0/contact) +
2D Compatibility (PS) -7028 + (NN) 2346 + (LL) 1000
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -45262.0 ( -109.33 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: