Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVSSSLAPCIGYVRG---GGAV-----------PPACCNGIRNVNNLARTTPDRRTACNCLKQLSGS-I------SG----VNPNNAAALPGKCGVNIPYKISASTNCATVK
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21246 for 336 contacts (-63.2/contact) +
2D Compatibility (PS) -6109 + (NN) 1956 + (LL) 1640
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -28809.0 ( -85.74 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: