Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQIQDFIDCLNVIIYFSSCIGYIDGH------VREP-----------TWGCCMGVHELNRLVKQDRDAQKICQCIELIAAVDDP---PF----V-LANIDALPSKCQTHLS--FPISVKKNCSEVQ
1W2Q Chain:A ((23-120))
-------------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLD---------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54779 for 425 contacts (-128.9/contact) +
2D Compatibility (PS) -6975 + (NN) -519 + (LL) 2556
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -61817.0 ( -145.45 by residue)
QMean score : 0.146
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: