Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIGCGTVVSYLNSCFPYVTG----TGA----------LGGCCKGIKDLYAAAQTTADRQSVCDCLKDLAASTT-G----VDLGKAAGLPSQCGLNIPYKIIPSTDCSKVQ
1S6D Chain:A ((19-97))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42302 for 378 contacts (-111.9/contact) +
2D Compatibility (PS) -5958 + (NN) -85 + (LL) 2228
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -52067.0 ( -137.74 by residue)
QMean score : 0.238
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: