Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPPDRMALKLAPCASAAQN----PSS---------APSNGCCTAVHTIGKQSPQCLCAVMLSKTAK------KS-G----IKPEVAITIPKRCNLVDRPVGYKCGDYTLP
2LVF Chain:A ((16-101))
-------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21296 for 342 contacts (-62.3/contact) +
2D Compatibility (PS) -6252 + (NN) 101 + (LL) 312
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -30235.0 ( -88.41 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: