Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------QISTSCTASMI-SSFTPCLNFITGSTSNGSSPT------------------QGCCGAVKSLMSGSMDCACLIITA-------NVPFQ---LPINRTLALGLPRACNMGGVPVQCKGGN
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR--CMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60991 for 590 contacts (-103.4/contact) +
2D Compatibility (PS) -8670 + (NN) -3186 + (LL) 28
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -76069.0 ( -128.93 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: