Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHNIEKEAEKLAPCTKAAQDLKA---------------PVSKSCCTVMEKKLKNPGCLCAIMLSHTAK-----NAG-----VKPEVAVTIPKRCNIPVRPVGHKCGAFPLV
1SM7 Chain:A ((14-100))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35147 for 401 contacts (-87.6/contact) +
2D Compatibility (PS) -6229 + (NN) -1880 + (LL) 1132
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -45524.0 ( -113.53 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: