Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ACSLSQVRTCTS--AVIAPNQMPSQQCCSELSAI-----TDFNCF------------CSM-----LLNQGTNLNQDYINNALL-IPSKCGEQGRNLRGQRCGNYAIP
1JJC Chain:B ((682-785))
LAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRTLRDEEVEEAVSRVAEALRARGFGLRGLDTP-----
General information:
TITO was launched using:
RESULT:
Template:
1JJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28220 for 416 contacts (-67.8/contact) +
2D Compatibility (PS) -8177 + (NN) -267 + (LL) 220
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -38294.0 ( -92.05 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1JJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJC-query.scw
PDB file :
Tito_Scwrl_1JJC.pdb
: