Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSCSTVYNTLMPCLGYVQS---GG---TV------------PRACCTGIKRLVSGARSTQDRRTVCVCLKNVSSGAKGG---PY-----LTRAAGLPARCGVPLP--YKTGPNDSCSSIPIYW
1W2Q Chain:A ((22-121))
-------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV-----------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40035 for 421 contacts (-95.1/contact) +
2D Compatibility (PS) -7419 + (NN) -3096 + (LL) 964
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -51786.0 ( -123.01 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: