Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------VTCGQVET--SLAPCMPYLTGGGNPAAPC---CNGVQNLKLLTP-----------TTTDRRDACRCVKAAASKFQ-----NIKEDAASALPTKCGVQIGIPISMTTNCDQIQ--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNA-APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27649 for 454 contacts (-60.9/contact) +
2D Compatibility (PS) -9145 + (NN) -4050 + (LL) -420
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -46264.0 ( -101.90 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: