Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVQQTLTTCLLYATNP---H--G-PP-----------PEPCCNGIKTLHGQSQTPLDRRDVCGCLKSMMTNL-K-L-------N-LPAVATLPKECGVDLG--YVISPDMDCSKT
1W2Q Chain:A ((23-121))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME----N--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV-------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47342 for 420 contacts (-112.7/contact) +
2D Compatibility (PS) -6924 + (NN) -469 + (LL) 624
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -58711.0 ( -139.79 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: