Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DYTRLMIQVHSYVPFCAYTYDYFSYCLDFLT----GYY-YK--------PGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYT------PP----MLADKIQQLPLLCNTHLSFPISSSMDCSTV
2LVF Chain:A ((16-101))
--------------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------D-ESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55195 for 362 contacts (-152.5/contact) +
2D Compatibility (PS) -6404 + (NN) -1690 + (LL) 3088
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -62751.0 ( -173.35 by residue)
QMean score : 0.166
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: