Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNYYEILEY-----VAPEEINKAYKRLGLKCHPDKLLPKKRKISRIVKKAINGAALSKLELEEMQSL
1FAF Chain:A ((11-68))
--ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK-GGSHALMQEL-NSLWG--TFKTEVYNLRMNL
General information:
TITO was launched using:
RESULT:
Template:
1FAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10428 for 304 contacts (-34.3/contact) +
2D Compatibility (PS) -5645 + (NN) -3011 + (LL) 692
1D Compatibility (HY) -4000 + (ID) 500
Total energy: -22892.0 ( -75.30 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_1FAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FAF-query.scw
PDB file :
Tito_Scwrl_1FAF.pdb
: