Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDSNASCNTGPFYKGVIKFLNQFQSRVNSEQ-----------SREDYVKESIIISLEDAISPFYSLVDKGVCYTIPNSERITLLDICVNQLVDNHRKIVHGVILLLSRLRRNRKSMLFNDKYFC---------------
2LGE Chain:A ((1-129))
-GDDDEPGGKGAMYEVTIEQSGDFRSFIKSVVVVANGTQLKDGATGESLASPVILSDEELAVEKVTLSTTGKAIEFAVS----------GGVVDGEDGVVNEPMQWVVTVYKNGKEIEKKSLVFRDGKEISTDDLNLYYN
General information:
TITO was launched using:
RESULT:
Template:
2LGE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10956 for 571 contacts (-19.2/contact) +
2D Compatibility (PS) -10749 + (NN) 974 + (LL) 1396
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -23485.0 ( -41.13 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_2LGE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LGE-query.scw
PDB file :
Tito_Scwrl_2LGE.pdb
: