Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHSNKAADRNSHESRKSYMVNLFGDQWKKANQIYQQYLDNALLQNITLNQGVEKMLQTLKSHNIYLAIVSNKKNINLREEVTYFKLDSY-FKRVVGSCDTAEDKPSAIPLLFALEESRLPIDRENVFFVGDSITDILCAQNANCLPIIYGQPISG-----------------------------YEDLLCFQHFDKLTDFIMKYLKDR
1SWV Chain:A ((101-260))
---------------------------------------------YASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMN-HMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFTIETMQELESVMEHIEK--
General information:
TITO was launched using:
RESULT:
Template:
1SWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72850 for 981 contacts (-74.3/contact) +
2D Compatibility (PS) -14589 + (NN) -10449 + (LL) 2912
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -98676.0 ( -100.59 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_1SWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SWV-query.scw
PDB file :
Tito_Scwrl_1SWV.pdb
: