Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIVVLSGYGL--NCEKETAFAFVECGRKLGVNNIEVRIVHIN---E-IIKNPGEL--RLSNILAIPGGFSYGDDTGAGNAFALRVKNNLLDKFQEFLSQDKLVIGICNGCQILAKLIPEFSNLALIRNDIGNYQCRWIKVKVSPQSSSVWLQDL-NE-LYLPIAHGEGKFFMNQGVLDQLIE--NNSVALRYINESGDYANLQFPYNPNGSTYDLAALSDKSGRVLALMPHPERGIFFTQQDNWPLEKEKCKRLKIAMPKYGDGMLIFENALRYFC |
2VDJ Chain:A ((36-244)) | LKIAILNLMPTKQETEAQLLRLIGNTPLQ-------LDVHLLHMES-SFYKTFRDIENEKFDGLIITGAPVETLSFEE-----VDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGV----QKYPL-KEKMFGVFEHEVREQ-HVKLLQGFDELFFAVHSRHTEVRE--------SDIREVKELTLLANSE--------------EA---GVHLVIGQEGRQVFALGHSEYSCDTLKQEYERDRDKGLNIDVPKNYFKHDNPNEKPLVRWRSH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100040 for 1421 contacts (-70.4/contact) +
2D Compatibility (PS) -19923 + (NN) -7139 + (LL) 1764
1D Compatibility (HY) -400 + (ID) 1250
Total energy: -126988.0 ( -89.37 by residue)
QMean score : 0.364
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