Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARRNKARKRKISPDSRYDSVLLMRFINVIMKYGKKSVAEKIVYNALSSAEKEVNERGVSIFETAVENVTPSVEVRSRRIGGATYQVPVEVKKDRAVSLALRWIVKSASAMRKKSGKGFFKCLCSEILDAYNKRGGAFKMCEEKYKMAEANKAFSHLRF
1RSS Chain:A ((12-156))
-----------LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQA---ANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEA-----HYRW
General information:
TITO was launched using:
RESULT:
Template:
1RSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75257 for 1026 contacts (-73.3/contact) +
2D Compatibility (PS) -15221 + (NN) -7501 + (LL) 1500
1D Compatibility (HY) -9600 + (ID) 3050
Total energy: -109129.0 ( -106.36 by residue)
QMean score : 0.687
(partial model without unconserved sides chains):
PDB file :
Tito_1RSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RSS-query.scw
PDB file :
Tito_Scwrl_1RSS.pdb
: