Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------MNLQSIIKELQDFWIGEGCTILHPYTSEVGAGTLHPATIMSAIDVKPTKIAYLQPVVRPADGRYGDNPNRLYQHHQ-------YQVIIKPSGNNL----QDVYLSSLRALGISTEKY---------DIKFIEDDWENPSVGASGLG----WEVTCNGMEVTQLTYIQQ----IGSINCRIIPGEV---------------AYGLERLAMCIQGVNNVYDIIWNDNGITYGDIFKQREYELS-------YLALDYYNTEVVQQQFEDTEK-LCKFLIEKELPVAAYDQC---------VKTSHLLNLL----DARGILGVN------------ERTAYI------GRVRELTKK--CCELYMSK- |
| 3ACP Chain:A ((1-417)) | MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRAD-YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG--RNVLSASLDGTIRLWECG-TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDEVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3ACP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -63617 for 1952 contacts (-32.6/contact) +
2D Compatibility (PS) -28839 + (NN) 5454 + (LL) 624
1D Compatibility (HY) -10000 + (ID) 2950
Total energy: -99328.0 ( -50.89 by residue)
QMean score : 0.099
|
|
|