Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYNNL--RDFIEALEKKRDLIRIKKEVSTILEMTEIHRRVSLNKGPAIIFENVVTENGKSVIPVLVNLFGTIERIAFGLNISPGELRDLGKLLAFLQSPEPPKNLKDVIKMFPLLKVVLSMRSKIVNKAPCQEVVLTGDDVDLSLLPIQTCWPNEPAPLITWPIVITKGPTEDKQDNFNLGIYRMQVMDKKTTLMRWLAHRGGASHHKRWKENGRSIKFPAAAVIGSDPATLIAAVTPVPETLSEYQFAGLLRKKPLELVNCKTISLQVPAHAEIVLEGYVSLDSYRNEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSVKKSYPGHAKRIIMGIFSFLKQFLYTKFIIVVDDDINIRDWKEVMWAISTRMDPVRDTVMIENAPIDYLDFASPESGLGGKMGFDATNKMPPETKREWGKKIEMSEEIVKKVTEKWDEYGLTDD |
3J6V Chain:E ((89-430)) | FFTKLTADELWKGALAETGAGARKGRGKR----TKRKRRKDLNRGQII-------GEGRR---------GFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQREEWDRKRKMKVKRERGWSGNSW------GGISLG----------PPDPGP---------NGETYDDFDTRILEVRNVFNMTAK---------------------EGRKRSVRVLVAVGNGRGAAGFAIGKATE-----------RADAFRKAKNRAVHYL----------HYIER--------YEDHTIYHDISLTFKRTHIK-------------MKKQPRGYGLRCHRAITTICRLIGIK------DMYAKVSG--------------SVNMLSLTRGLFQGLSRQE-THQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPED----EVPDI----KLDWDDVKAVQGMKRSVWSGLKRAAT------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3694 for 2516 contacts (-1.5/contact) +
2D Compatibility (PS) -35759 + (NN) -16169 + (LL) 13176
1D Compatibility (HY) 0 + (ID) 2900
Total energy: -45346.0 ( -18.02 by residue)
QMean score : 0.190
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