Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHTGWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNV--VLM-PSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSANNISIYCAIIVKKVDEKTRQKTSINEILRD
3BFP Chain:A ((75-188))
-------------------------------------------------------------------------------------------------------VNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAG--------NVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQ---------------DEKGVFVGVPAKRM------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3BFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154753 for 896 contacts (-172.7/contact) +
2D Compatibility (PS) -12476 + (NN) -7178 + (LL) 12504
1D Compatibility (HY) -5600 + (ID) 1700
Total energy: -169203.0 ( -188.84 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_3BFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BFP-query.scw
PDB file :
Tito_Scwrl_3BFP.pdb
: