Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKHYQIVIIGGGTAGVTVASRLLRKNQNLKEKIAIIDPADHHYY-QPLWTLVGAGVSSLKSSRKDMESVIPEGANWIKQ-AVSSFQPENNSVILGDNTVVYYDFLVVAPGLQINWS-SIKGLKENIGKNGVCSNYSPDYVNETWNQISNFKQGNAIFTHPNTPIKCGGAPMKIMYLAEDYFRKHKIRSNANVIYATPKDALFDV---GKYNKELERIVEERNITVNYNYNLVEIDGDKKVATFEHIKAYDRKTISYDMLHVTPPMGPL-DVVKESTLSDSEGWVDVNPTTLQHKSYSNVFALGDASNVPTS--------KTGAAIRKQAPIVANNLLQVMNNQMLTHHYDGYTSCPIVTGYNRLILAEFDYNKNTKETMPFNQAKERRSMYIFKKDLLPKMYWYGMLKGLI |
| 2GQW Chain:A ((6-308)) | --LKAPVVVLGAGLASVSFVAELR--QAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK--RAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATM-----PVHTLRTLEDARRIQAGL----------RPQSRLLIVGGGVIGLEL--AATARTAG----VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG--VVLLDD-----GTRIAADMVVVGIGVLANDALARAAGLAC-DDGIFVDA-YGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDP------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -164373 for 2390 contacts (-68.8/contact) +
2D Compatibility (PS) -31044 + (NN) -10759 + (LL) 6772
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -209804.0 ( -87.78 by residue)
QMean score : 0.423
|
|
|