Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLK---EVLLTEEDIQNICKELGAQLTKDYQ--GKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
1G9T Chain:B ((5-175))
----MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASS--------RDLKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIG---------
General information:
TITO was launched using:
RESULT:
Template:
1G9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125771 for 1219 contacts (-103.2/contact) +
2D Compatibility (PS) -16867 + (NN) 1095 + (LL) 500
1D Compatibility (HY) -21200 + (ID) 3900
Total energy: -166143.0 ( -136.29 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1G9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G9T-query.scw
PDB file :
Tito_Scwrl_1G9T.pdb
: