Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRK-ERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
3HD2 Chain:A ((3-142))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDAPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
3HD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105859 for 1002 contacts (-105.6/contact) +
2D Compatibility (PS) -14478 + (NN) -3843 + (LL) 1800
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -136780.0 ( -136.51 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3HD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD2-query.scw
PDB file :
Tito_Scwrl_3HD2.pdb
: