Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLNLGSKKQASFYVACELYKEM-AF----NQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNE-DDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD
1FQO Chain:B ((1-243))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVD-IPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPS--------------
General information:
TITO was launched using:
RESULT:
Template:
1FQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137157 for 2013 contacts (-68.1/contact) +
2D Compatibility (PS) -25868 + (NN) -15996 + (LL) 992
1D Compatibility (HY) -20000 + (ID) 3950
Total energy: -201979.0 ( -100.34 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1FQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FQO-query.scw
PDB file :
Tito_Scwrl_1FQO.pdb
: