Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
4SKN Chain:E ((21-222))
---------------FIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQNPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPRSVYRGFFGCRHFSKTNELLQKSGKKPIDWKE---
General information:
TITO was launched using:
RESULT:
Template:
4SKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99666 for 1600 contacts (-62.3/contact) +
2D Compatibility (PS) -21553 + (NN) -11238 + (LL) 1424
1D Compatibility (HY) -16800 + (ID) 4800
Total energy: -152633.0 ( -95.40 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_4SKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4SKN-query.scw
PDB file :
Tito_Scwrl_4SKN.pdb
: