Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVF-------------IDVANKEAFIDIGGMHARAKVEKGVKWIT---DKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLL------------VNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKLSS------DALHQAFN- |
| 1SKX Chain:A ((25-313)) | LTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVKVSLQLRGEDGSVWNYKPPIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLELLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKI-MAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SKX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31770 for 1060 contacts (-30.0/contact) +
2D Compatibility (PS) -16841 + (NN) 1211 + (LL) -172
1D Compatibility (HY) -7200 + (ID) 750
Total energy: -55522.0 ( -52.38 by residue)
QMean score : 0.221
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