Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
2OXP Chain:A ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPET------VEKYGPEASAFTKKMDENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
2OXP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45246 for 1047 contacts (-43.2/contact) +
2D Compatibility (PS) -13679 + (NN) -2072 + (LL) 5892
1D Compatibility (HY) -15600 + (ID) 6250
Total energy: -76955.0 ( -73.50 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_2OXP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OXP-query.scw
PDB file :
Tito_Scwrl_2OXP.pdb
: