Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGAKNIR--FMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
1BD4 Chain:B ((48-242))
---------------MTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT-
General information:
TITO was launched using:
RESULT:
Template:
1BD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132244 for 1442 contacts (-91.7/contact) +
2D Compatibility (PS) -20145 + (NN) -1662 + (LL) 1304
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -170297.0 ( -118.10 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1BD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BD4-query.scw
PDB file :
Tito_Scwrl_1BD4.pdb
: